Human SNP ID | rs7341475 |
---|---|
Human chromosome | chr7 |
Human SNP position | 103764368 |
Pig chromosome | chr9 |
Pig SNP position | 114419809 |
PubMed ID | 18282107 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18282107 |
Study | Genome-wide association identifies a common variant in the reelin gene that increases the risk of schizophrenia only in women. |
Disease/Trait | Schizophrenia |
Initial sample | 660 Ashkenazi Jewish cases, 2,271 Ashkenazi Jewish controls |
Replication sample | 1,859 European ancestry cases, 3,943 European ancestry controls, 759 Ashkenazi Jewish cases, 3,389 Ashkenazi Jewish controls, 415 Han Chinese ancestry cases, 458 Han Chinese ancestry controls |
Region | 7q22.1 |
Chromosome id | chr7 |
Chromosome position | 103764368 |
Reported gene | RELN |
Mapped gene | RELN |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5649 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7341475-G |
SNPs | rs7341475 |
Merged | 0 |
SNP id current | 7341475 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.62 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | |
Or beta | 1.58 |
%95 Ci | [1.31-1.89] |
Platform | Affymetrix [510552] |
CNV | N |
Mapped trait | schizophrenia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000692 |
Study accession | GCST000155 |