SNP Detail For rs7341475
1.Mapping Information
Human SNP ID rs7341475
Human chromosome chr7
Human SNP position 103764368
Pig chromosome chr9
Pig SNP position 114419809
2.Annotation Information
PubMed ID18282107
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18282107
StudyGenome-wide association identifies a common variant in the reelin gene that increases the risk of schizophrenia only in women.
Disease/TraitSchizophrenia
Initial sample660 Ashkenazi Jewish cases, 2,271 Ashkenazi Jewish controls
Replication sample1,859 European ancestry cases, 3,943 European ancestry controls, 759 Ashkenazi Jewish cases, 3,389 Ashkenazi Jewish controls, 415 Han Chinese ancestry cases, 458 Han Chinese ancestry controls
Region7q22.1
Chromosome idchr7
Chromosome position103764368
Reported geneRELN
Mapped geneRELN
Upstream gene id
Downstream gene id
SNP gene ids5649
Upstream gene distance
Downstream gene distance
SNP risk allelers7341475-G
SNPsrs7341475
Merged0
SNP id current7341475
Contextintron_variant
Intergenic0
Allele frequency0.62
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta1.58
%95 Ci[1.31-1.89]
PlatformAffymetrix [510552]
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST000155