Human SNP ID | rs7325799 |
---|---|
Human chromosome | chr13 |
Human SNP position | 46554466 |
Pig chromosome | chr11 |
Pig SNP position | 21291034 |
PubMed ID | 25646338 |
---|---|
Journal | Am J Clin Nutr |
Link | www.ncbi.nlm.nih.gov/pubmed/25646338 |
Study | Genetic loci associated with circulating phospholipid trans fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Trans fatty acid levels |
Initial sample | 8,013 European ancestry individuals |
Replication sample | 1,082 African American individuals, 669 Chinese ancestry individuals, 657 Hispanic individuals |
Region | 13q14.13 |
Chromosome id | chr13 |
Chromosome position | 46554466 |
Reported gene | NR |
Mapped gene | LRCH1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23143 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7325799-T |
SNPs | rs7325799 |
Merged | 0 |
SNP id current | 7325799 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.0199 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (Total trans-18:1, EA) |
Or beta | 0.1777 |
%95 Ci | [0.1-0.25] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | total trans-18:1 fatty acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006823 |
Study accession | GCST002721 |