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SNP Detail For rs73208120
1.Mapping Information
| Human SNP ID | rs73208120 |
|---|---|
| Human chromosome | chr12 |
| Human SNP position | 117309785 |
| Pig chromosome | chr14 |
| Pig SNP position | 37442811 |
2.Annotation Information
| PubMed ID | 26151821 |
|---|---|
| Journal | Nat Commun |
| Link | www.ncbi.nlm.nih.gov/pubmed/26151821 |
| Study | Genome-wide association study of colorectal cancer identifies six new susceptibility loci. |
| Disease/Trait | Colorectal cancer |
| Initial sample | 18,299 European ancestry cases, 19,656 European ancestry controls |
| Replication sample | 4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls |
| Region | 12q24.22 |
| Chromosome id | chr12 |
| Chromosome position | 117309785 |
| Reported gene | NOS1 |
| Mapped gene | NOS1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4842 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs73208120-G |
| SNPs | rs73208120 |
| Merged | |
| SNP id current | 73208120 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.11 |
| P value | 0.00000003 |
| Pvalue mlog | 7.52287874528033 |
| P value text | (EA) |
| Or beta | 1.16 |
| %95 Ci | [1.11鈥?.23] |
| Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | colorectal cancer |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
| Study accession | GCST003017 |
| PubMed ID | 26151821 |
| Journal | Nat Commun |
| Link | www.ncbi.nlm.nih.gov/pubmed/26151821 |
| Study | Genome-wide association study of colorectal cancer identifies six new susceptibility loci. |
| Disease/Trait | Colorectal cancer |
| Initial sample | 18,299 European ancestry cases, 19,656 European ancestry controls |
| Replication sample | 4,725 East Asian ancestry cases, 9,969 East Asian ancestry controls |
| Region | 12q24.22 |
| Chromosome id | chr12 |
| Chromosome position | 117309785 |
| Reported gene | NOS1 |
| Mapped gene | NOS1 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 4842 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs73208120-G |
| SNPs | rs73208120 |
| Merged | |
| SNP id current | 73208120 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.11 |
| P value | 0.00000003 |
| Pvalue mlog | 7.52287874528033 |
| P value text | |
| Or beta | 1.16 |
| %95 Ci | [1.11-1.23] |
| Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
| CNV | N |
| Mapped trait | colorectal cancer |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
| Study accession | GCST003017 |
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