SNP Detail For rs73197788
1.Mapping Information
Human SNP ID rs73197788
Human chromosome chr13
Human SNP position 54019582
Pig chromosome chr11
Pig SNP position 28332804
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region13q14.3
Chromosome idchr13
Chromosome position54019582
Reported geneNR
Mapped geneLINC00558 - LOC105370211
Upstream gene id100861552
Downstream gene id105370211
SNP gene ids
Upstream gene distance143463
Downstream gene distance77521
SNP risk allelers73197788-?
SNPsrs73197788
Merged
SNP id current73197788
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(Japanese)
Or beta0.7369
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957