SNP Detail For rs73175262
1.Mapping Information
Human SNP ID rs73175262
Human chromosome chr2
Human SNP position 11618305
Pig chromosome chr3
Pig SNP position 134002006
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region2p25.1
Chromosome idchr2
Chromosome position11618305
Reported geneGREB1
Mapped geneGREB1
Upstream gene id
Downstream gene id
SNP gene ids9687
Upstream gene distance
Downstream gene distance
SNP risk allelers73175262-A
SNPsrs73175262
Merged0
SNP id current73175262
Contextmissense_variant
Intergenic0
Allele frequency0.053
P value0.000009
Pvalue mlog5.04575749056067
P value text(IGFBP-3 )
Or beta0.03
%95 Ci[NR] ng/mL increase
PlatformIllumina [899892]
CNVN
Mapped traitIGFBP-3 measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004626
Study accessionGCST001762
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region2p25.1
Chromosome idchr2
Chromosome position11618305
Reported geneGREB1
Mapped geneGREB1
Upstream gene id
Downstream gene id
SNP gene ids9687
Upstream gene distance
Downstream gene distance
SNP risk allelers73175262-A
SNPsrs73175262
Merged0
SNP id current73175262
Contextmissense_variant
Intergenic0
Allele frequency0.053
P value0.00000007
Pvalue mlog7.15490195998574
P value text(MCP1 )
Or beta0.05
%95 Ci[NR] pg/mL increase
PlatformIllumina [899892]
CNVN
Mapped traitCCL2 measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004749
Study accessionGCST001762