SNP Detail For rs7315438
1.Mapping Information
Human SNP ID rs7315438
Human chromosome chr12
Human SNP position 115453598
Pig chromosome chr14
Pig SNP position 39114794
2.Annotation Information
PubMed ID21761138
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21761138
StudyMeta-analysis of new genome-wide association studies of colorectal cancer risk.
Disease/TraitColorectal cancer
Initial sample2,906 European ancestry cases, 3,416 European ancestry controls
Replication sample8,161 European ancestry cases, 9,101 European ancestry controls
Region12q24.21
Chromosome idchr12
Chromosome position115453598
Reported geneMED13L
Mapped geneLOC105370003
Upstream gene id
Downstream gene id
SNP gene ids105370003
Upstream gene distance
Downstream gene distance
SNP risk allelers7315438-?
SNPsrs7315438
Merged0
SNP id current7315438
Contextintergenic_variant
Intergenic0
Allele frequency0.58
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.11
%95 Ci[1.06-1.15]
PlatformIllumina [378739]
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST001161