Human SNP ID | rs7315438 |
---|---|
Human chromosome | chr12 |
Human SNP position | 115453598 |
Pig chromosome | chr14 |
Pig SNP position | 39114794 |
PubMed ID | 21761138 |
---|---|
Journal | Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21761138 |
Study | Meta-analysis of new genome-wide association studies of colorectal cancer risk. |
Disease/Trait | Colorectal cancer |
Initial sample | 2,906 European ancestry cases, 3,416 European ancestry controls |
Replication sample | 8,161 European ancestry cases, 9,101 European ancestry controls |
Region | 12q24.21 |
Chromosome id | chr12 |
Chromosome position | 115453598 |
Reported gene | MED13L |
Mapped gene | LOC105370003 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105370003 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7315438-? |
SNPs | rs7315438 |
Merged | 0 |
SNP id current | 7315438 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.58 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.06-1.15] |
Platform | Illumina [378739] |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST001161 |