Human SNP ID | rs7312122 |
---|---|
Human chromosome | chr12 |
Human SNP position | 112721033 |
Pig chromosome | chr14 |
Pig SNP position | 41547370 |
PubMed ID | 19901119 |
---|---|
Journal | J Clin Oncol |
Link | www.ncbi.nlm.nih.gov/pubmed/19901119 |
Study | Germline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects. |
Disease/Trait | Methotrexate phramacokinetics (acute lymphoblastic leukemia) |
Initial sample | 315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases |
Replication sample | NA |
Region | 12q24.13 |
Chromosome id | chr12 |
Chromosome position | 112721033 |
Reported gene | intergenic |
Mapped gene | MIR1302-1 - RPH3A |
Upstream gene id | 100302227 |
Downstream gene id | 22895 |
SNP gene ids | |
Upstream gene distance | 25857 |
Downstream gene distance | 70505 |
SNP risk allele | rs7312122-G |
SNPs | rs7312122 |
Merged | 0 |
SNP id current | 7312122 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.16 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | |
%95 Ci | [NR] |
Platform | Affymetrix [398699] |
CNV | N |
Mapped trait | response to antineoplastic agent |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097327 |
Study accession | GCST000523 |