Human SNP ID | rs73114594 |
---|---|
Human chromosome | chr3 |
Human SNP position | 77603591 |
Pig chromosome | chr13 |
Pig SNP position | 187719977 |
PubMed ID | 23319000 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23319000 |
Study | Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. |
Disease/Trait | Metabolite levels (5-HIAA/ MHPG Ratio) |
Initial sample | up to 398 European ancestry individuals |
Replication sample | NA |
Region | 3p12.3 |
Chromosome id | chr3 |
Chromosome position | 77603591 |
Reported gene | ROBO2 |
Mapped gene | ROBO2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6092 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs73114594-A |
SNPs | rs73114594 |
Merged | 0 |
SNP id current | 73114594 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 0.272 |
%95 Ci | unit increase |
Platform | Illumina [5767231] (imputed) |
CNV | N |
Mapped trait | MHPG measurement, 5-HIAA measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005133, http://www.ebi.ac.uk/efo/EFO_0005132 |
Study accession | GCST001821 |