Human SNP ID | rs73078593 |
---|---|
Human chromosome | chr20 |
Human SNP position | 12310875 |
Pig chromosome | chr17 |
Pig SNP position | 23720765 |
PubMed ID | 26252872 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 20p12.1 |
Chromosome id | chr20 |
Chromosome position | 12310875 |
Reported gene | BTBD3, SPTLC3 |
Mapped gene | LOC105372531 - LOC105372534 |
Upstream gene id | 105372531 |
Downstream gene id | 105372534 |
SNP gene ids | |
Upstream gene distance | 351932 |
Downstream gene distance | 63261 |
SNP risk allele | rs73078593-C |
SNPs | rs73078593 |
Merged | |
SNP id current | 73078593 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.03 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (EA) |
Or beta | 0.2829 |
%95 Ci | [0.17-0.4] unit decrease |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |
PubMed ID | 26252872 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26252872 |
Study | Variations in the FRA10AC1 Fragile Site and 15q21 Are Associated with Cerebrospinal Fluid Aå°¾1-42 Level. |
Disease/Trait | Cognitive decline rate in late mild cognitive impairment |
Initial sample | 472 European ancestry cases, 47 cases |
Replication sample | NA |
Region | 20p12.1 |
Chromosome id | chr20 |
Chromosome position | 12310875 |
Reported gene | BTBD3, SPTLC3 |
Mapped gene | LOC105372531 - LOC105372534 |
Upstream gene id | 105372531 |
Downstream gene id | 105372534 |
SNP gene ids | |
Upstream gene distance | 351932 |
Downstream gene distance | 63261 |
SNP risk allele | rs73078593-C |
SNPs | rs73078593 |
Merged | |
SNP id current | 73078593 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.03 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.278 |
%95 Ci | [0.17-0.39] unit decrease |
Platform | Illumina [~ 9000000] (imputed) |
CNV | N |
Mapped trait | cognitive impairment, cognitive decline measurement |
Mapped trait URI | http://purl.obolibrary.org/obo/HP_0100543, http://www.ebi.ac.uk/efo/EFO_0007710 |
Study accession | GCST003075 |