SNP Detail For rs73058713
1.Mapping Information
Human SNP ID rs73058713
Human chromosome chr5
Human SNP position 20374104
Pig chromosome chr16
Pig SNP position 9675675
2.Annotation Information
PubMed ID25642632
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25642632
StudyDiscovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy.
Disease/TraitLeprosy
Initial sample1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases
Replication sample6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls
Region5p14.3
Chromosome idchr5
Chromosome position20374104
Reported geneintergenic
Mapped geneCDH18
Upstream gene id
Downstream gene id
SNP gene ids1016
Upstream gene distance
Downstream gene distance
SNP risk allelers73058713-A
SNPsrs73058713
Merged0
SNP id current73058713
Contextintron_variant
Intergenic0
Allele frequency0.146
P value0.00000001
Pvalue mlog8
P value text
Or beta1.19
%95 Ci[NR]
PlatformIllumina [4577171] (imputed)
CNVN
Mapped traitleprosy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001054
Study accessionGCST002772