Human SNP ID | rs73058713 |
---|---|
Human chromosome | chr5 |
Human SNP position | 20374104 |
Pig chromosome | chr16 |
Pig SNP position | 9675675 |
PubMed ID | 25642632 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25642632 |
Study | Discovery of six new susceptibility loci and analysis of pleiotropic effects in leprosy. |
Disease/Trait | Leprosy |
Initial sample | 1,548 Chinese ancestry cases, 2,150 Chinese ancestry controls, 4,362 Chinese ancestry controls with immune-related diseases |
Replication sample | 6,765 Chinese ancestry cases, 9,505 Chinese ancestry controls |
Region | 5p14.3 |
Chromosome id | chr5 |
Chromosome position | 20374104 |
Reported gene | intergenic |
Mapped gene | CDH18 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1016 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs73058713-A |
SNPs | rs73058713 |
Merged | 0 |
SNP id current | 73058713 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.146 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 1.19 |
%95 Ci | [NR] |
Platform | Illumina [4577171] (imputed) |
CNV | N |
Mapped trait | leprosy |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001054 |
Study accession | GCST002772 |