Human SNP ID | rs730566 |
---|---|
Human chromosome | chr3 |
Human SNP position | 48445644 |
Pig chromosome | chr13 |
Pig SNP position | 34422741 |
PubMed ID | 22210626 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22210626 |
Study | Genome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP. |
Disease/Trait | Prion diseases |
Initial sample | 1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinean ancestry cases, 286 Papua New Guinean ancestry controls |
Replication sample | NA |
Region | 3p21.31 |
Chromosome id | chr3 |
Chromosome position | 48445644 |
Reported gene | NR |
Mapped gene | TMA7 - ATRIP |
Upstream gene id | 51372 |
Downstream gene id | 84126 |
SNP gene ids | |
Upstream gene distance | 1515 |
Downstream gene distance | 1066 |
SNP risk allele | rs730566-? |
SNPs | rs730566 |
Merged | 0 |
SNP id current | 730566 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.27 |
%95 Ci | [NR] |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | prion disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004720 |
Study accession | GCST001366 |