SNP Detail For rs730566
1.Mapping Information
Human SNP ID rs730566
Human chromosome chr3
Human SNP position 48445644
Pig chromosome chr13
Pig SNP position 34422741
2.Annotation Information
PubMed ID22210626
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22210626
StudyGenome-wide association study in multiple human prion diseases suggests genetic risk factors additional to PRNP.
Disease/TraitPrion diseases
Initial sample1,281 European ancestry cases, 6,015 European ancestry controls, 290 Papua New Guinean ancestry cases, 286 Papua New Guinean ancestry controls
Replication sampleNA
Region3p21.31
Chromosome idchr3
Chromosome position48445644
Reported geneNR
Mapped geneTMA7 - ATRIP
Upstream gene id51372
Downstream gene id84126
SNP gene ids
Upstream gene distance1515
Downstream gene distance1066
SNP risk allelers730566-?
SNPsrs730566
Merged0
SNP id current730566
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.27
%95 Ci[NR]
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitprion disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004720
Study accessionGCST001366