SNP Detail For rs7301016
1.Mapping Information
Human SNP ID rs7301016
Human chromosome chr12
Human SNP position 62492343
Pig chromosome chr5
Pig SNP position 29869527
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region12q14.1
Chromosome idchr12
Chromosome position62492343
Reported geneNR
Mapped geneMON2
Upstream gene id
Downstream gene id
SNP gene ids23041
Upstream gene distance
Downstream gene distance
SNP risk allelers7301016-G
SNPsrs7301016
Merged0
SNP id current7301016
Contextintron_variant
Intergenic0
Allele frequency0.206214031137184
P value0.000008
Pvalue mlog5.09691001300805
P value text(IGP73)
Or beta0.1687
%95 Ci[0.095-0.243] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848