SNP Detail For rs72995528
1.Mapping Information
Human SNP ID rs72995528
Human chromosome chr3
Human SNP position 147808253
Pig chromosome chr13
Pig SNP position 95897176
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region3q24
Chromosome idchr3
Chromosome position147808253
Reported geneNR
Mapped geneLOC102724145 - LOC100507461
Upstream gene id102724145
Downstream gene id100507461
SNP gene ids
Upstream gene distance49575
Downstream gene distance269874
SNP risk allelers72995528-?
SNPsrs72995528
Merged
SNP id current72995528
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000006
Pvalue mlog6.22184874961635
P value text
Or beta0.5172
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956