Human SNP ID | rs72927357 |
---|---|
Human chromosome | chr4 |
Human SNP position | 100980253 |
Pig chromosome | JH118650-1 |
Pig SNP position | 11993 |
PubMed ID | 24324551 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24324551 |
Study | Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. |
Disease/Trait | Ejection fraction in Tripanosoma cruzi seropositivity |
Initial sample | 580 Brazilian ancestry individuals |
Replication sample | NA |
Region | 4q24 |
Chromosome id | chr4 |
Chromosome position | 100980253 |
Reported gene | NR |
Mapped gene | LINC01216 - PPP3CA |
Upstream gene id | 100874275 |
Downstream gene id | 5530 |
SNP gene ids | |
Upstream gene distance | 305140 |
Downstream gene distance | 43177 |
SNP risk allele | rs72927357-? |
SNPs | rs72927357 |
Merged | 0 |
SNP id current | 72927357 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [5486770] (imputed) |
CNV | N |
Mapped trait | Trypanosoma cruzi seropositivity, ejection fraction measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005530, http://www.ebi.ac.uk/efo/EFO_0005527 |
Study accession | GCST002281 |