SNP Detail For rs72927357
1.Mapping Information
Human SNP ID rs72927357
Human chromosome chr4
Human SNP position 100980253
Pig chromosome JH118650-1
Pig SNP position 11993
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitEjection fraction in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region4q24
Chromosome idchr4
Chromosome position100980253
Reported geneNR
Mapped geneLINC01216 - PPP3CA
Upstream gene id100874275
Downstream gene id5530
SNP gene ids
Upstream gene distance305140
Downstream gene distance43177
SNP risk allelers72927357-?
SNPsrs72927357
Merged0
SNP id current72927357
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitTrypanosoma cruzi seropositivity, ejection fraction measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005530, http://www.ebi.ac.uk/efo/EFO_0005527
Study accessionGCST002281