SNP Detail For rs72909131
1.Mapping Information
Human SNP ID rs72909131
Human chromosome chr4
Human SNP position 82591688
Pig chromosome chr8
Pig SNP position 145040651
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region4q21.22
Chromosome idchr4
Chromosome position82591688
Reported geneNR
Mapped geneTMEM150C - LINC00575
Upstream gene id441027
Downstream gene id439934
SNP gene ids
Upstream gene distance29715
Downstream gene distance21425
SNP risk allelers72909131-?
SNPsrs72909131
Merged
SNP id current72909131
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta0.5037
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957