Human SNP ID | rs72875462 |
---|---|
Human chromosome | chr2 |
Human SNP position | 43852171 |
Pig chromosome | chr3 |
Pig SNP position | 102759300 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | LDL cholesterol |
Initial sample | up 62,166 European ancestry individuals |
Replication sample | NA |
Region | 2p21 |
Chromosome id | chr2 |
Chromosome position | 43852171 |
Reported gene | ABCG8 |
Mapped gene | ABCG8 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64241 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs72875462-C |
SNPs | rs72875462 |
Merged | |
SNP id current | 72875462 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.93 |
P value | 2E-35 |
Pvalue mlog | 34.698970004336 |
P value text | |
Or beta | 0.148 |
%95 Ci | [0.12-0.17] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST002898 |