SNP Detail For rs72875462
1.Mapping Information
Human SNP ID rs72875462
Human chromosome chr2
Human SNP position 43852171
Pig chromosome chr3
Pig SNP position 102759300
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitLDL cholesterol
Initial sampleup 62,166 European ancestry individuals
Replication sampleNA
Region2p21
Chromosome idchr2
Chromosome position43852171
Reported geneABCG8
Mapped geneABCG8
Upstream gene id
Downstream gene id
SNP gene ids64241
Upstream gene distance
Downstream gene distance
SNP risk allelers72875462-C
SNPsrs72875462
Merged
SNP id current72875462
Contextintron_variant
Intergenic0
Allele frequency0.93
P value2E-35
Pvalue mlog34.698970004336
P value text
Or beta0.148
%95 Ci[0.12-0.17] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST002898