SNP Detail For rs72863877
1.Mapping Information
Human SNP ID rs72863877
Human chromosome chr17
Human SNP position 70210256
Pig chromosome JH118414-1
Pig SNP position 61319
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region17q24.3
Chromosome idchr17
Chromosome position70210256
Reported geneNR
Mapped geneKCNJ2 - CALM2P1
Upstream gene id3759
Downstream gene id100128390
SNP gene ids
Upstream gene distance30212
Downstream gene distance30991
SNP risk allelers72863877-?
SNPsrs72863877
Merged
SNP id current72863877
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(Japanese)
Or beta0.7501
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957