Human SNP ID | rs728478 |
---|---|
Human chromosome | chr17 |
Human SNP position | 59389143 |
Pig chromosome | chr12 |
Pig SNP position | 36817798 |
PubMed ID | 24952745 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24952745 |
Study | Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. |
Disease/Trait | QT interval |
Initial sample | Up to 70,389 European ancestry individuals, up to 672 Orcadian individuals |
Replication sample | Up to 33,316 European ancestry individuals |
Region | 17q22 |
Chromosome id | chr17 |
Chromosome position | 59389143 |
Reported gene | YPEL2 |
Mapped gene | YPEL2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 388403 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs728478-G |
SNPs | rs728478 |
Merged | 0 |
SNP id current | 728478 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.445 |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 0.4 |
%95 Ci | [0.22-0.58] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | QT interval |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004682 |
Study accession | GCST002500 |