SNP Detail For rs728478
1.Mapping Information
Human SNP ID rs728478
Human chromosome chr17
Human SNP position 59389143
Pig chromosome chr12
Pig SNP position 36817798
2.Annotation Information
PubMed ID24952745
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24952745
StudyGenetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization.
Disease/TraitQT interval
Initial sampleUp to 70,389 European ancestry individuals, up to 672 Orcadian individuals
Replication sampleUp to 33,316 European ancestry individuals
Region17q22
Chromosome idchr17
Chromosome position59389143
Reported geneYPEL2
Mapped geneYPEL2
Upstream gene id
Downstream gene id
SNP gene ids388403
Upstream gene distance
Downstream gene distance
SNP risk allelers728478-G
SNPsrs728478
Merged0
SNP id current728478
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.445
P value0.000008
Pvalue mlog5.09691001300805
P value text
Or beta0.4
%95 Ci[0.22-0.58] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitQT interval
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004682
Study accessionGCST002500