SNP Detail For rs72817562
1.Mapping Information
Human SNP ID rs72817562
Human chromosome chr5
Human SNP position 165149962
Pig chromosome chr16
Pig SNP position 63354401
2.Annotation Information
PubMed ID25993607
JournalJAMA Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/25993607
StudyMeta-analysis of Genome-wide Association Studies for Neuroticism, and the Polygenic Association With Major Depressive Disorder.
Disease/TraitNeuroticism
Initial sampleUp to 627 Cilento individuals, up to 2,296 Erasmus Rupchen Family individuals, up to 1,650 Orcadian individuals, up to 909 Vis individuals, up to 58,179 European ancestry individuals
Replication sampleUp to 9,786 European ancestry individuals
Region5q34
Chromosome idchr5
Chromosome position165149962
Reported geneNR
Mapped geneLOC105377703, LOC105377702
Upstream gene id
Downstream gene id
SNP gene ids105377703, 105377702
Upstream gene distance
Downstream gene distance
SNP risk allelers72817562-T
SNPsrs72817562
Merged
SNP id current72817562
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.035
%95 Ci[0.019-0.051] unit increase
PlatformAffymetrix, Illumina, Perlegen [6949614] (imputed)
CNVN
Mapped traitneuroticism measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007660
Study accessionGCST002920