SNP Detail For rs72810983
1.Mapping Information
Human SNP ID rs72810983
Human chromosome chr5
Human SNP position 173891251
Pig chromosome chr16
Pig SNP position 54875147
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region5q35.2
Chromosome idchr5
Chromosome position173891251
Reported geneNR
Mapped geneCPEB4
Upstream gene id
Downstream gene id
SNP gene ids80315
Upstream gene distance
Downstream gene distance
SNP risk allelers72810983-A
SNPsrs72810983
Merged
SNP id current72810983
Contextintron_variant
Intergenic0
Allele frequency0.69
P value0.00000002
Pvalue mlog7.69897000433601
P value text(EA)
Or beta1.0646069
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043