SNP Detail For rs72793138
1.Mapping Information
Human SNP ID rs72793138
Human chromosome chr10
Human SNP position 53721128
Pig chromosome chr14
Pig SNP position 104914665
2.Annotation Information
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region10q21.1
Chromosome idchr10
Chromosome position53721128
Reported geneNR
Mapped geneLOC105378310 - PCDH15
Upstream gene id105378310
Downstream gene id65217
SNP gene ids
Upstream gene distance558083
Downstream gene distance81643
SNP risk allelers72793138-A
SNPsrs72793138
Merged
SNP id current72793138
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.14
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048