SNP Detail For rs72772480
1.Mapping Information
Human SNP ID rs72772480
Human chromosome chr16
Human SNP position 23050620
Pig chromosome chr3
Pig SNP position 23561492
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region16p12.2
Chromosome idchr16
Chromosome position23050620
Reported geneNR
Mapped geneHS3ST2 - USP31
Upstream gene id9956
Downstream gene id57478
SNP gene ids
Upstream gene distance134282
Downstream gene distance10786
SNP risk allelers72772480-?
SNPsrs72772480
Merged
SNP id current72772480
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000002
Pvalue mlog6.69897000433601
P value text(Japanese)
Or beta0.6071
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956