SNP Detail For rs727333
1.Mapping Information
Human SNP ID rs727333
Human chromosome chr21
Human SNP position 40331020
Pig chromosome chr13
Pig SNP position 214009875
2.Annotation Information
PubMed ID23518928
JournalMol Endocrinol
Linkwww.ncbi.nlm.nih.gov/pubmed/23518928
StudyTSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression.
Disease/TraitEstradiol plasma levels (breast cancer)
Initial sample700 European ancestry cases, 50 African ancestry cases, 17 Asian ancestry cases, 5 American Indian ancestry cases
Replication sampleNA
Region21q22.2
Chromosome idchr21
Chromosome position40331020
Reported geneNR
Mapped geneDSCAM
Upstream gene id
Downstream gene id
SNP gene ids1826
Upstream gene distance
Downstream gene distance
SNP risk allelers727333-?
SNPsrs727333
Merged0
SNP id current727333
Contextintron_variant
Intergenic0
Allele frequency0.081
P value0.000001
Pvalue mlog6
P value text
Or beta1.542
%95 Ci[1.295-1.837] unit increase
PlatformIllumina [563945]
CNVN
Mapped traitestradiol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004697
Study accessionGCST001914