SNP Detail For rs72725879
1.Mapping Information
Human SNP ID rs72725879
Human chromosome chr8
Human SNP position 127091724
Pig chromosome chr4
Pig SNP position 13352629
2.Annotation Information
PubMed ID26034056
JournalCancer Discov
Linkwww.ncbi.nlm.nih.gov/pubmed/26034056
StudyA large multi-ethnic genome-wide association study of prostate cancer identifies novel risk variants and substantial ethnic differences.
Disease/TraitProstate cancer
Initial sample6,406 European ancestry cases, 601 African American cases, 288 East Asian ancestry cases, 488 Latino cases30,866 European ancestry controls, 1,650 African American controls, 2,938 East Asian ancestry controls, 3,141 Latino controls
Replication sample4,599 European ancestry cases, 2,265 African American cases, 2,940 European ancestry controls, 2,414 African American controls
Region8q24.21
Chromosome idchr8
Chromosome position127091724
Reported geneNR
Mapped genePRNCR1
Upstream gene id
Downstream gene id
SNP gene ids101867536
Upstream gene distance
Downstream gene distance
SNP risk allelers72725879-T
SNPsrs72725879
Merged
SNP id current72725879
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.667
P value0.00000003
Pvalue mlog7.52287874528033
P value text(conditioned, East Asian)
Or beta1.92
%95 Ci[1.54-2.44]
PlatformAffymetrix [up to 19977088] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002944