SNP Detail For rs72700966
1.Mapping Information
Human SNP ID rs72700966
Human chromosome chr9
Human SNP position 10505224
Pig chromosome chr1
Pig SNP position 236273475
2.Annotation Information
PubMed ID23962720
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23962720
StudyA genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy.
Disease/TraitEpilepsy (remission after treatment)
Initial sample889 European and unknown ancestry epilepsy cases
Replication sampleNA
Region9p23
Chromosome idchr9
Chromosome position10505224
Reported genePTPRD
Mapped genePTPRD
Upstream gene id
Downstream gene id
SNP gene ids5789
Upstream gene distance
Downstream gene distance
SNP risk allelers72700966-C
SNPsrs72700966
Merged0
SNP id current72700966
Contextintron_variant
Intergenic0
Allele frequency0.92
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta2.7
%95 Ci[NR]
PlatformIllumina [6923995] (imputed)
CNVN
Mapped traitresponse to drug, epilepsy
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0042493, http://www.ebi.ac.uk/efo/EFO_0000474
Study accessionGCST002141