Human SNP ID | rs72700966 |
---|---|
Human chromosome | chr9 |
Human SNP position | 10505224 |
Pig chromosome | chr1 |
Pig SNP position | 236273475 |
PubMed ID | 23962720 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23962720 |
Study | A genome-wide association study and biological pathway analysis of epilepsy prognosis in a prospective cohort of newly treated epilepsy. |
Disease/Trait | Epilepsy (remission after treatment) |
Initial sample | 889 European and unknown ancestry epilepsy cases |
Replication sample | NA |
Region | 9p23 |
Chromosome id | chr9 |
Chromosome position | 10505224 |
Reported gene | PTPRD |
Mapped gene | PTPRD |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5789 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs72700966-C |
SNPs | rs72700966 |
Merged | 0 |
SNP id current | 72700966 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.92 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 2.7 |
%95 Ci | [NR] |
Platform | Illumina [6923995] (imputed) |
CNV | N |
Mapped trait | response to drug, epilepsy |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0042493, http://www.ebi.ac.uk/efo/EFO_0000474 |
Study accession | GCST002141 |