SNP Detail For rs72689147
1.Mapping Information
Human SNP ID rs72689147
Human chromosome chr4
Human SNP position 155718736
Pig chromosome chr8
Pig SNP position 46534219
2.Annotation Information
PubMed ID26343387
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26343387
StudyA comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease.
Disease/TraitCoronary artery disease
Initial sample42,096 European ancestry cases, 361 African American cases, 758 Hispanic American cases, 12,658 South Asian ancestry cases, 1,802 Lebanese ancestry cases, 3,614 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls,
Replication sampleNA
Region4q32.1
Chromosome idchr4
Chromosome position155718736
Reported geneGUCY1A3
Mapped geneLOC105377506, GUCY1A3
Upstream gene id
Downstream gene id
SNP gene ids105377506, 2982
Upstream gene distance
Downstream gene distance
SNP risk allelers72689147-G
SNPsrs72689147
Merged
SNP id current72689147
Contextintron_variant
Intergenic0
Allele frequency0.816978
P value0.000000006
Pvalue mlog8.22184874961635
P value text
Or beta1.07
%95 Ci[1.05- 1.10]
PlatformAffymetrix, Illumina [8600000] (imputed)
CNVN
Mapped traitcoronary artery disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000378
Study accessionGCST003116
PubMed ID26343387
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26343387
StudyA comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease.
Disease/TraitMyocardial infarction
Initial sample27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3
Replication sampleNA
Region4q32.1
Chromosome idchr4
Chromosome position155718736
Reported geneGUCY1A3
Mapped geneLOC105377506, GUCY1A3
Upstream gene id
Downstream gene id
SNP gene ids105377506, 2982
Upstream gene distance
Downstream gene distance
SNP risk allelers72689147-G
SNPsrs72689147
Merged
SNP id current72689147
Contextintron_variant
Intergenic0
Allele frequency0.82
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta1.08
%95 Ci[1.05-1.1]
PlatformAffymetrix, Illumina [8600000] (imputed)
CNVN
Mapped traitmyocardial infarction
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000612
Study accessionGCST003117