Human SNP ID | rs72669744 |
---|---|
Human chromosome | chr1 |
Human SNP position | 55650832 |
Pig chromosome | chr6 |
Pig SNP position | 144794404 |
PubMed ID | 22286219 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22286219 |
Study | Genome-wide association study identifies multiple loci influencing human serum metabolite levels. |
Disease/Trait | Lipid metabolism phenotypes |
Initial sample | 8,330 European ancestry individuals |
Replication sample | NA |
Region | 1p32.2 |
Chromosome id | chr1 |
Chromosome position | 55650832 |
Reported gene | PCSK9 |
Mapped gene | MIR4422 - LOC105378740 |
Upstream gene id | 100616272 |
Downstream gene id | 105378740 |
SNP gene ids | |
Upstream gene distance | 425109 |
Downstream gene distance | 132849 |
SNP risk allele | rs72669744-? |
SNPs | rs72669744 |
Merged | 0 |
SNP id current | 72669744 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 1E-19 |
Pvalue mlog | 19 |
P value text | (L-LDL-FC) |
Or beta | 0.59 |
%95 Ci | [0.47-0.71] unit decrease |
Platform | Illumina [~ 7700000] (imputed) |
CNV | N |
Mapped trait | lipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004529 |
Study accession | GCST001392 |