SNP Detail For rs72669744
1.Mapping Information
Human SNP ID rs72669744
Human chromosome chr1
Human SNP position 55650832
Pig chromosome chr6
Pig SNP position 144794404
2.Annotation Information
PubMed ID22286219
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22286219
StudyGenome-wide association study identifies multiple loci influencing human serum metabolite levels.
Disease/TraitLipid metabolism phenotypes
Initial sample8,330 European ancestry individuals
Replication sampleNA
Region1p32.2
Chromosome idchr1
Chromosome position55650832
Reported genePCSK9
Mapped geneMIR4422 - LOC105378740
Upstream gene id100616272
Downstream gene id105378740
SNP gene ids
Upstream gene distance425109
Downstream gene distance132849
SNP risk allelers72669744-?
SNPsrs72669744
Merged0
SNP id current72669744
Contextintron_variant
Intergenic1
Allele frequencyNR
P value1E-19
Pvalue mlog19
P value text(L-LDL-FC)
Or beta0.59
%95 Ci[0.47-0.71] unit decrease
PlatformIllumina [~ 7700000] (imputed)
CNVN
Mapped traitlipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004529
Study accessionGCST001392