SNP Detail For rs72637224
1.Mapping Information
Human SNP ID rs72637224
Human chromosome chr1
Human SNP position 168505772
Pig chromosome chr4
Pig SNP position 90178038
2.Annotation Information
PubMed ID26030696
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/26030696
StudyA Genome-wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.
Disease/TraitEmphysema imaging phenotypes
Initial sample5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls
Replication sampleNA
Region1q24.2
Chromosome idchr1
Chromosome position168505772
Reported geneXCL2
Mapped geneLOC101928565 - XCL2
Upstream gene id101928565
Downstream gene id6846
SNP gene ids
Upstream gene distance10128
Downstream gene distance34993
SNP risk allelers72637224-T
SNPsrs72637224
Merged
SNP id current72637224
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text(Perc15, All)
Or beta3.6
%95 Ci[1.25-5.95] unit increase
PlatformIllumina [7600000] (imputed)
CNVN
Mapped traitemphysema imaging measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007626
Study accessionGCST002945