Human SNP ID | rs72637224 |
---|---|
Human chromosome | chr1 |
Human SNP position | 168505772 |
Pig chromosome | chr4 |
Pig SNP position | 90178038 |
PubMed ID | 26030696 |
---|---|
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/26030696 |
Study | A Genome-wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes. |
Disease/Trait | Emphysema imaging phenotypes |
Initial sample | 5,385 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,613 European ancestry controls, 2,132 African American controls |
Replication sample | NA |
Region | 1q24.2 |
Chromosome id | chr1 |
Chromosome position | 168505772 |
Reported gene | XCL2 |
Mapped gene | LOC101928565 - XCL2 |
Upstream gene id | 101928565 |
Downstream gene id | 6846 |
SNP gene ids | |
Upstream gene distance | 10128 |
Downstream gene distance | 34993 |
SNP risk allele | rs72637224-T |
SNPs | rs72637224 |
Merged | |
SNP id current | 72637224 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | (Perc15, All) |
Or beta | 3.6 |
%95 Ci | [1.25-5.95] unit increase |
Platform | Illumina [7600000] (imputed) |
CNV | N |
Mapped trait | emphysema imaging measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007626 |
Study accession | GCST002945 |