SNP Detail For rs72634501
1.Mapping Information
Human SNP ID rs72634501
Human chromosome chr1
Human SNP position 39085816
Pig chromosome chr6
Pig SNP position 88015491
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitHDL cholesterol
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region1p34.3
Chromosome idchr1
Chromosome position39085816
Reported geneMACF1, PABPC4
Mapped geneMACF1
Upstream gene id
Downstream gene id
SNP gene ids23499
Upstream gene distance
Downstream gene distance
SNP risk allelers72634501-T
SNPsrs72634501
Merged
SNP id current72634501
Contextintron_variant
Intergenic0
Allele frequency0.77
P value0.0000000008
Pvalue mlog9.09691001300805
P value text
Or beta0.044
%95 Ci[0.03-0.058] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002899