Human SNP ID | rs72634501 |
---|---|
Human chromosome | chr1 |
Human SNP position | 39085816 |
Pig chromosome | chr6 |
Pig SNP position | 88015491 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | HDL cholesterol |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 1p34.3 |
Chromosome id | chr1 |
Chromosome position | 39085816 |
Reported gene | MACF1, PABPC4 |
Mapped gene | MACF1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23499 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs72634501-T |
SNPs | rs72634501 |
Merged | |
SNP id current | 72634501 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.77 |
P value | 0.0000000008 |
Pvalue mlog | 9.09691001300805 |
P value text | |
Or beta | 0.044 |
%95 Ci | [0.03-0.058] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST002899 |