SNP Detail For rs72634258
1.Mapping Information
Human SNP ID rs72634258
Human chromosome chr1
Human SNP position 8090578
Pig chromosome chr6
Pig SNP position 63142918
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region1p36.23
Chromosome idchr1
Chromosome position8090578
Reported geneNR
Mapped geneRPL7AP18 - LOC102724539
Upstream gene id390993
Downstream gene id102724539
SNP gene ids
Upstream gene distance32091
Downstream gene distance118094
SNP risk allelers72634258-?
SNPsrs72634258
Merged
SNP id current72634258
Contextintron_variant
Intergenic1
Allele frequencyNR
P value1E-19
Pvalue mlog19
P value text(EA)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043