Human SNP ID | rs7263077 |
---|---|
Human chromosome | chr20 |
Human SNP position | 42605938 |
Pig chromosome | chr17 |
Pig SNP position | 50437651 |
PubMed ID | 25811787 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/25811787 |
Study | Modulation of Genetic Associations with Serum Urate Levels by Body-Mass-Index in Humans. |
Disease/Trait | Urate levels in obese individuals |
Initial sample | 4,613 European ancestry male individuals, 4,690 European ancestry female individuals, 142 European ancestry individuals |
Replication sample | NA |
Region | 20q12 |
Chromosome id | chr20 |
Chromosome position | 42605938 |
Reported gene | PTPRT |
Mapped gene | PTPRT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 11122 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7263077-G |
SNPs | rs7263077 |
Merged | 0 |
SNP id current | 7263077 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.17 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 0.09 |
%95 Ci | [0.051-0.129] kg/m2 increase |
Platform | Affymetrix, Illumina [at least 188473] (imputed) |
CNV | N |
Mapped trait | obese body mass index status, urate measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007041, http://www.ebi.ac.uk/efo/EFO_0004531 |
Study accession | GCST002828 |