Human SNP ID | rs7258249 |
---|---|
Human chromosome | chr19 |
Human SNP position | 8206837 |
Pig chromosome | chr2 |
Pig SNP position | 71449674 |
PubMed ID | 22359512 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22359512 |
Study | Genome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations. |
Disease/Trait | Sphingolipid levels |
Initial sample | 4,034 European ancestry individuals |
Replication sample | NA |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 8206837 |
Reported gene | LASS4 |
Mapped gene | FBN3 - CERS4 |
Upstream gene id | 84467 |
Downstream gene id | 79603 |
SNP gene ids | |
Upstream gene distance | 57825 |
Downstream gene distance | 2492 |
SNP risk allele | rs7258249-? |
SNPs | rs7258249 |
Merged | 0 |
SNP id current | 7258249 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 1E-34 |
Pvalue mlog | 34 |
P value text | (levels) |
Or beta | 0 |
%95 Ci | [0.80-3.70] % increase |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | sphingolipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004622 |
Study accession | GCST001413 |
PubMed ID | 19798445 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19798445 |
Study | Genetic determinants of circulating sphingolipid concentrations in European populations. |
Disease/Trait | Sphingolipid levels |
Initial sample | 4,110 European ancestry individuals |
Replication sample | NA |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 8206837 |
Reported gene | LASS4 |
Mapped gene | FBN3 - CERS4 |
Upstream gene id | 84467 |
Downstream gene id | 79603 |
SNP gene ids | |
Upstream gene distance | 57825 |
Downstream gene distance | 2492 |
SNP risk allele | rs7258249-G |
SNPs | rs7258249 |
Merged | 0 |
SNP id current | 7258249 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.48 |
P value | 2E-27 |
Pvalue mlog | 26.698970004336 |
P value text | (SM 18:1Mol%) |
Or beta | 0 |
%95 Ci | [0.0007-0.001] mol % increase |
Platform | Illumina [318237] |
CNV | N |
Mapped trait | sphingolipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004622 |
Study accession | GCST000493 |