Human SNP ID | rs7255436 |
---|---|
Human chromosome | chr19 |
Human SNP position | 8368312 |
Pig chromosome | chr2 |
Pig SNP position | 71276160 |
PubMed ID | 20686565 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/20686565 |
Study | Biological, clinical and population relevance of 95 loci for blood lipids. |
Disease/Trait | HDL cholesterol |
Initial sample | 99,900 European ancestry individuals |
Replication sample | NA |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 8368312 |
Reported gene | ANGPTL4 |
Mapped gene | ANGPTL4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 51129 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7255436-C |
SNPs | rs7255436 |
Merged | 0 |
SNP id current | 7255436 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.47 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 0.45 |
%95 Ci | [0.29-0.61] mg/dL decrease |
Platform | Affymetrix, Illumina, Perlegen [~ 2600000] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000755 |
PubMed ID | 24097068 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24097068 |
Study | Discovery and refinement of loci associated with lipid levels. |
Disease/Trait | HDL cholesterol |
Initial sample | 94,595 European ancestry individuals |
Replication sample | 93,982 European ancestry individuals |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 8368312 |
Reported gene | ANGPTL4 |
Mapped gene | ANGPTL4 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 51129 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7255436-C |
SNPs | rs7255436 |
Merged | 0 |
SNP id current | 7255436 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.47 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 0.032 |
%95 Ci | [NR] unit decrease |
Platform | NR [NR] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST002223 |