Human SNP ID | rs7240405 |
---|---|
Human chromosome | chr18 |
Human SNP position | 49632720 |
Pig chromosome | chr1 |
Pig SNP position | 108701479 |
PubMed ID | 20031538 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20031538 |
Study | Genome-wide association analysis of high-density lipoprotein cholesterol in the population-based KORA study sheds new light on intergenic regions. |
Disease/Trait | HDL cholesterol |
Initial sample | Up to 4,274 European ancestry individuals |
Replication sample | Up to 15,873 European ancestry individuals |
Region | 18q21.1 |
Chromosome id | chr18 |
Chromosome position | 49632720 |
Reported gene | LIPG |
Mapped gene | LOC105372112 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105372112 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7240405-A |
SNPs | rs7240405 |
Merged | 0 |
SNP id current | 7240405 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.15 |
P value | 0.0000000005 |
Pvalue mlog | 9.30102999566398 |
P value text | |
Or beta | 2.27 |
%95 Ci | [NR] mg/dl decrease |
Platform | Affymetrix [up to 2557253] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000240 |