SNP Detail For rs7240405
1.Mapping Information
Human SNP ID rs7240405
Human chromosome chr18
Human SNP position 49632720
Pig chromosome chr1
Pig SNP position 108701479
2.Annotation Information
PubMed ID20031538
JournalCirc Cardiovasc Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20031538
StudyGenome-wide association analysis of high-density lipoprotein cholesterol in the population-based KORA study sheds new light on intergenic regions.
Disease/TraitHDL cholesterol
Initial sampleUp to 4,274 European ancestry individuals
Replication sampleUp to 15,873 European ancestry individuals
Region18q21.1
Chromosome idchr18
Chromosome position49632720
Reported geneLIPG
Mapped geneLOC105372112
Upstream gene id
Downstream gene id
SNP gene ids105372112
Upstream gene distance
Downstream gene distance
SNP risk allelers7240405-A
SNPsrs7240405
Merged0
SNP id current7240405
Contextintergenic_variant
Intergenic0
Allele frequency0.15
P value0.0000000005
Pvalue mlog9.30102999566398
P value text
Or beta2.27
%95 Ci[NR] mg/dl decrease
PlatformAffymetrix [up to 2557253] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000240