Human SNP ID | rs7238033 |
---|---|
Human chromosome | chr18 |
Human SNP position | 45737001 |
Pig chromosome | chr1 |
Pig SNP position | 105431534 |
PubMed ID | 21824976 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21824976 |
Study | A genome-wide association study of bladder cancer identifies a new susceptibility locus within SLC14A1, a urea transporter gene on chromosome 18q12.3. |
Disease/Trait | Bladder cancer |
Initial sample | 4,501 European ancestry cases, 6,076 European ancestry controls |
Replication sample | 1,382 European ancestry cases, 2,201 European ancestry controls |
Region | 18q12.3 |
Chromosome id | chr18 |
Chromosome position | 45737001 |
Reported gene | SLC14A1 |
Mapped gene | LOC105372093, SLC14A1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105372093, 6563 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7238033-? |
SNPs | rs7238033 |
Merged | 0 |
SNP id current | 7238033 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000000009 |
Pvalue mlog | 8.04575749056067 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.13-1.28] |
Platform | Illumina [555912] |
CNV | N |
Mapped trait | bladder carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000292 |
Study accession | GCST001193 |