SNP Detail For rs7238033
1.Mapping Information
Human SNP ID rs7238033
Human chromosome chr18
Human SNP position 45737001
Pig chromosome chr1
Pig SNP position 105431534
2.Annotation Information
PubMed ID21824976
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21824976
StudyA genome-wide association study of bladder cancer identifies a new susceptibility locus within SLC14A1, a urea transporter gene on chromosome 18q12.3.
Disease/TraitBladder cancer
Initial sample4,501 European ancestry cases, 6,076 European ancestry controls
Replication sample1,382 European ancestry cases, 2,201 European ancestry controls
Region18q12.3
Chromosome idchr18
Chromosome position45737001
Reported geneSLC14A1
Mapped geneLOC105372093, SLC14A1
Upstream gene id
Downstream gene id
SNP gene ids105372093, 6563
Upstream gene distance
Downstream gene distance
SNP risk allelers7238033-?
SNPsrs7238033
Merged0
SNP id current7238033
Contextintron_variant
Intergenic0
Allele frequency
P value0.000000009
Pvalue mlog8.04575749056067
P value text
Or beta1.2
%95 Ci[1.13-1.28]
PlatformIllumina [555912]
CNVN
Mapped traitbladder carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000292
Study accessionGCST001193