SNP Detail For rs7236477
1.Mapping Information
Human SNP ID rs7236477
Human chromosome chr18
Human SNP position 31322359
Pig chromosome chr6
Pig SNP position 107869026
2.Annotation Information
PubMed ID20208534
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20208534
StudyCommon variants at 5q22 associate with pediatric eosinophilic esophagitis.
Disease/TraitEosinophilic esophagitis (pediatric)
Initial sample181 European ancestry cases, 1,974 European ancestry controls
Replication sample170 European ancestry cases, 1,130 European ancestry controls
Region18q12.1
Chromosome idchr18
Chromosome position31322359
Reported geneDSG1
Mapped geneDSG1
Upstream gene id
Downstream gene id
SNP gene ids1828
Upstream gene distance
Downstream gene distance
SNP risk allelers7236477-G
SNPsrs7236477
Merged0
SNP id current7236477
Contextintron_variant
Intergenic0
Allele frequency0.03
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta2.22
%95 Ci[1.39-3.55]
PlatformIllumina [~ 550000]
CNVN
Mapped traiteosinophilic esophagitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004232
Study accessionGCST000620