Human SNP ID | rs7236477 |
---|---|
Human chromosome | chr18 |
Human SNP position | 31322359 |
Pig chromosome | chr6 |
Pig SNP position | 107869026 |
PubMed ID | 20208534 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20208534 |
Study | Common variants at 5q22 associate with pediatric eosinophilic esophagitis. |
Disease/Trait | Eosinophilic esophagitis (pediatric) |
Initial sample | 181 European ancestry cases, 1,974 European ancestry controls |
Replication sample | 170 European ancestry cases, 1,130 European ancestry controls |
Region | 18q12.1 |
Chromosome id | chr18 |
Chromosome position | 31322359 |
Reported gene | DSG1 |
Mapped gene | DSG1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 1828 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7236477-G |
SNPs | rs7236477 |
Merged | 0 |
SNP id current | 7236477 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.03 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 2.22 |
%95 Ci | [1.39-3.55] |
Platform | Illumina [~ 550000] |
CNV | N |
Mapped trait | eosinophilic esophagitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004232 |
Study accession | GCST000620 |