SNP Detail For rs7231041
1.Mapping Information
Human SNP ID rs7231041
Human chromosome chr18
Human SNP position 25813140
Pig chromosome chr6
Pig SNP position 103447536
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region18q11.2
Chromosome idchr18
Chromosome position25813140
Reported geneSS18
Mapped geneZNF521 - LOC105372033
Upstream gene id25925
Downstream gene id105372033
SNP gene ids
Upstream gene distance460890
Downstream gene distance144844
SNP risk allelers7231041-G
SNPsrs7231041
Merged0
SNP id current7231041
Contextintergenic_variant
Intergenic1
Allele frequency0.174
P value0.000002
Pvalue mlog5.69897000433601
P value text(Moderate activity )
Or beta0.04
%95 Ci[NR] min/d increase
PlatformIllumina [899892]
CNVN
Mapped traitphysical activity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003940
Study accessionGCST001762
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region18q11.2
Chromosome idchr18
Chromosome position25813140
Reported geneSS18
Mapped geneZNF521 - LOC105372033
Upstream gene id25925
Downstream gene id105372033
SNP gene ids
Upstream gene distance460890
Downstream gene distance144844
SNP risk allelers7231041-G
SNPsrs7231041
Merged0
SNP id current7231041
Contextintergenic_variant
Intergenic1
Allele frequency0.174
P value0.000005
Pvalue mlog5.30102999566398
P value text(Moderate activity )
Or beta0.03
%95 Ci[NR] %awake time increase
PlatformIllumina [899892]
CNVN
Mapped traitphysical activity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003940
Study accessionGCST001762
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region18q11.2
Chromosome idchr18
Chromosome position25813140
Reported geneSS18
Mapped geneZNF521 - LOC105372033
Upstream gene id25925
Downstream gene id105372033
SNP gene ids
Upstream gene distance460890
Downstream gene distance144844
SNP risk allelers7231041-G
SNPsrs7231041
Merged0
SNP id current7231041
Contextintergenic_variant
Intergenic1
Allele frequency0.174
P value0.000003
Pvalue mlog5.52287874528033
P value text(Moderate&vigorous activity )
Or beta0.03
%95 Ci[NR] min/d increase
PlatformIllumina [899892]
CNVN
Mapped traitphysical activity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003940
Study accessionGCST001762