SNP Detail For rs7228085
1.Mapping Information
Human SNP ID rs7228085
Human chromosome chr18
Human SNP position 49634444
Pig chromosome chr1
Pig SNP position 108704060
2.Annotation Information
PubMed ID22286219
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22286219
StudyGenome-wide association study identifies multiple loci influencing human serum metabolite levels.
Disease/TraitLipid metabolism phenotypes
Initial sample8,330 European ancestry individuals
Replication sampleNA
Region18q21.1
Chromosome idchr18
Chromosome position49634444
Reported geneLIPG
Mapped geneLOC105372112
Upstream gene id
Downstream gene id
SNP gene ids105372112
Upstream gene distance
Downstream gene distance
SNP risk allelers7228085-?
SNPsrs7228085
Merged0
SNP id current7228085
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.00000000007
Pvalue mlog10.1549019599857
P value text(XL-HDL-TG)
Or beta0.11
%95 Ci[0.071-0.149] unit increase
PlatformIllumina [~ 7700000] (imputed)
CNVN
Mapped traitlipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004529
Study accessionGCST001392