SNP Detail For rs722599
1.Mapping Information
Human SNP ID rs722599
Human chromosome chr14
Human SNP position 74860740
Pig chromosome chr7
Pig SNP position 103915685
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region14q24.3
Chromosome idchr14
Chromosome position74860740
Reported geneNR
Mapped genePROX2
Upstream gene id
Downstream gene id
SNP gene ids283571
Upstream gene distance
Downstream gene distance
SNP risk allelers722599-C
SNPsrs722599
Merged0
SNP id current722599
Contextintron_variant
Intergenic0
Allele frequency0.4301501460374
P value0.000008
Pvalue mlog5.09691001300805
P value text(IGP22)
Or beta0.1395
%95 Ci[0.078-0.201] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848