SNP Detail For rs7216064
1.Mapping Information
Human SNP ID rs7216064
Human chromosome chr17
Human SNP position 67902693
Pig chromosome chr12
Pig SNP position 14545001
2.Annotation Information
PubMed ID22797724
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22797724
StudyA genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population.
Disease/TraitLung adenocarcinoma
Initial sample1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls
Replication sample4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls
Region17q24.2
Chromosome idchr17
Chromosome position67902693
Reported geneBPTF
Mapped geneBPTF
Upstream gene id
Downstream gene id
SNP gene ids2186
Upstream gene distance
Downstream gene distance
SNP risk allelers7216064-A
SNPsrs7216064
Merged0
SNP id current7216064
Contextintron_variant
Intergenic0
Allele frequency0.707
P value0.00000000007
Pvalue mlog10.1549019599857
P value text
Or beta1.2
%95 Ci[1.13-1.26]
PlatformIllumina [538166]
CNVN
Mapped traitlung adenocarcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000571
Study accessionGCST001609
PubMed ID23143601
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23143601
StudyGenome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia.
Disease/TraitLung cancer
Initial sample5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls
Replication sample1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls
Region17q24.2
Chromosome idchr17
Chromosome position67902693
Reported geneBPTF
Mapped geneBPTF
Upstream gene id
Downstream gene id
SNP gene ids2186
Upstream gene distance
Downstream gene distance
SNP risk allelers7216064-A
SNPsrs7216064
Merged0
SNP id current7216064
Contextintron_variant
Intergenic0
Allele frequency0.63
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.16
%95 Ci[1.09-1.25]
PlatformIllumina [596032]
CNVN
Mapped traitlung carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001071
Study accessionGCST001740