Human SNP ID | rs7216064 |
---|---|
Human chromosome | chr17 |
Human SNP position | 67902693 |
Pig chromosome | chr12 |
Pig SNP position | 14545001 |
PubMed ID | 22797724 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22797724 |
Study | A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population. |
Disease/Trait | Lung adenocarcinoma |
Initial sample | 1,695 Japanese ancestry cases, 5,333 Japanese ancestry controls |
Replication sample | 4,334 Japanese ancestry cases, 8,202 Japanese ancestry controls |
Region | 17q24.2 |
Chromosome id | chr17 |
Chromosome position | 67902693 |
Reported gene | BPTF |
Mapped gene | BPTF |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2186 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7216064-A |
SNPs | rs7216064 |
Merged | 0 |
SNP id current | 7216064 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.707 |
P value | 0.00000000007 |
Pvalue mlog | 10.1549019599857 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.13-1.26] |
Platform | Illumina [538166] |
CNV | N |
Mapped trait | lung adenocarcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000571 |
Study accession | GCST001609 |
PubMed ID | 23143601 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23143601 |
Study | Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia. |
Disease/Trait | Lung cancer |
Initial sample | 5,510 East Asian ancestry cases, 4,544 East Asian ancestry controls |
Replication sample | 1,099 East Asian ancestry cases, 2,913 East Asian ancestry controls |
Region | 17q24.2 |
Chromosome id | chr17 |
Chromosome position | 67902693 |
Reported gene | BPTF |
Mapped gene | BPTF |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2186 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7216064-A |
SNPs | rs7216064 |
Merged | 0 |
SNP id current | 7216064 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.63 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.16 |
%95 Ci | [1.09-1.25] |
Platform | Illumina [596032] |
CNV | N |
Mapped trait | lung carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001071 |
Study accession | GCST001740 |