SNP Detail For rs7210100
1.Mapping Information
Human SNP ID rs7210100
Human chromosome chr17
Human SNP position 49359387
Pig chromosome chr12
Pig SNP position 25492460
2.Annotation Information
PubMed ID21602798
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21602798
StudyGenome-wide association study of prostate cancer in men of African ancestry identifies a susceptibility locus at 17q21.
Disease/TraitProstate cancer
Initial sample3,425 African American cases, 3,290 African American controls
Replication sample1,500 African American/Afro-Caribbean cases, 1,908 African American/Afro-Caribbean controls, 344 Sub-Saharan African ancestry cases, 1,361 Sub-Saharan African ancestry controls
Region17q21.33
Chromosome idchr17
Chromosome position49359387
Reported geneZNF652
Mapped geneZNF652
Upstream gene id
Downstream gene id
SNP gene ids22834
Upstream gene distance
Downstream gene distance
SNP risk allelers7210100-?
SNPsrs7210100
Merged0
SNP id current7210100
Contextintron_variant
Intergenic0
Allele frequency0.05
P value0.0000000000003
Pvalue mlog12.5228787452803
P value text
Or beta1.51
%95 Ci[1.35-1.69]
PlatformIllumina [10471986]
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001078