Human SNP ID | rs7210100 |
---|---|
Human chromosome | chr17 |
Human SNP position | 49359387 |
Pig chromosome | chr12 |
Pig SNP position | 25492460 |
PubMed ID | 21602798 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21602798 |
Study | Genome-wide association study of prostate cancer in men of African ancestry identifies a susceptibility locus at 17q21. |
Disease/Trait | Prostate cancer |
Initial sample | 3,425 African American cases, 3,290 African American controls |
Replication sample | 1,500 African American/Afro-Caribbean cases, 1,908 African American/Afro-Caribbean controls, 344 Sub-Saharan African ancestry cases, 1,361 Sub-Saharan African ancestry controls |
Region | 17q21.33 |
Chromosome id | chr17 |
Chromosome position | 49359387 |
Reported gene | ZNF652 |
Mapped gene | ZNF652 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 22834 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7210100-? |
SNPs | rs7210100 |
Merged | 0 |
SNP id current | 7210100 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.05 |
P value | 0.0000000000003 |
Pvalue mlog | 12.5228787452803 |
P value text | |
Or beta | 1.51 |
%95 Ci | [1.35-1.69] |
Platform | Illumina [10471986] |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001078 |