Human SNP ID | rs7200786 |
---|---|
Human chromosome | chr16 |
Human SNP position | 11083944 |
Pig chromosome | JH118627-1 |
Pig SNP position | 61243 |
PubMed ID | 21833088 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/21833088 |
Study | Genetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis. |
Disease/Trait | Multiple sclerosis |
Initial sample | 9,772 European ancestry cases, 16,849 European ancestry controls |
Replication sample | 4,218 European ancestry cases, 7,296 European ancestry controls |
Region | 16p13.13 |
Chromosome id | chr16 |
Chromosome position | 11083944 |
Reported gene | CLEC16A |
Mapped gene | CLEC16A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23274 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7200786-A |
SNPs | rs7200786 |
Merged | 0 |
SNP id current | 7200786 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000000000000009 |
Pvalue mlog | 16.0457574905606 |
P value text | |
Or beta | 1.15 |
%95 Ci | [1.13-1.16] |
Platform | Illumina [465434] |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST001198 |
PubMed ID | 26502338 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26502338 |
Study | Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 5,201 European ancestry cases, 9,066 European ancestry controls |
Replication sample | NA |
Region | 16p13.13 |
Chromosome id | chr16 |
Chromosome position | 11083944 |
Reported gene | CIITA, SOCS1 |
Mapped gene | CLEC16A |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23274 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7200786-A |
SNPs | rs7200786 |
Merged | 0 |
SNP id current | 7200786 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 1.15 |
%95 Ci | [NR] |
Platform | Illumina [> 644674] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST003156 |