Human SNP ID | rs7192 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32443869 |
Pig chromosome | chr7 |
Pig SNP position | 29040746 |
PubMed ID | 22541561 |
---|---|
Journal | Am J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22541561 |
Study | A genome-wide association study reveals that variants within the HLA region are associated with risk for nonobstructive azoospermia. |
Disease/Trait | Non-obstructive azoospermia |
Initial sample | 802 Han Chinese ancestry cases, 1,863 Han Chinese ancestry controls |
Replication sample | 1,424 Han Chinese ancestry cases, 2,713 Han Chinese ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32443869 |
Reported gene | HLA-DRA |
Mapped gene | HLA-DRA |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3122 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs7192-T |
SNPs | rs7192 |
Merged | 0 |
SNP id current | 7192 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.26 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.29 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [912924] |
CNV | N |
Mapped trait | azoospermia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000279 |
Study accession | GCST001494 |