SNP Detail For rs7192
1.Mapping Information
Human SNP ID rs7192
Human chromosome chr6
Human SNP position 32443869
Pig chromosome chr7
Pig SNP position 29040746
2.Annotation Information
PubMed ID22541561
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22541561
StudyA genome-wide association study reveals that variants within the HLA region are associated with risk for nonobstructive azoospermia.
Disease/TraitNon-obstructive azoospermia
Initial sample802 Han Chinese ancestry cases, 1,863 Han Chinese ancestry controls
Replication sample1,424 Han Chinese ancestry cases, 2,713 Han Chinese ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32443869
Reported geneHLA-DRA
Mapped geneHLA-DRA
Upstream gene id
Downstream gene id
SNP gene ids3122
Upstream gene distance
Downstream gene distance
SNP risk allelers7192-T
SNPsrs7192
Merged0
SNP id current7192
Contextmissense_variant
Intergenic0
Allele frequency0.26
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.29
%95 Ci[NR]
PlatformAffymetrix, Illumina [912924]
CNVN
Mapped traitazoospermia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000279
Study accessionGCST001494