SNP Detail For rs7178424
1.Mapping Information
Human SNP ID rs7178424
Human chromosome chr15
Human SNP position 62088060
Pig chromosome chr1
Pig SNP position 121327771
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region15q22.2
Chromosome idchr15
Chromosome position62088060
Reported geneC2CD4A
Mapped geneNPM1P47 - C2CD4B
Upstream gene id100129972
Downstream gene id388125
SNP gene ids
Upstream gene distance4661
Downstream gene distance75478
SNP risk allelers7178424-T
SNPsrs7178424
Merged0
SNP id current7178424
Contextupstream_gene_variant
Intergenic1
Allele frequency0.47
P value0.000000006
Pvalue mlog8.22184874961635
P value text
Or beta0.021
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817