Human SNP ID | rs7176508 |
---|---|
Human chromosome | chr15 |
Human SNP position | 69726651 |
Pig chromosome | chr1 |
Pig SNP position | 185529522 |
PubMed ID | 18758461 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18758461 |
Study | A genome-wide association study identifies six susceptibility loci for chronic lymphocytic leukemia. |
Disease/Trait | Chronic lymphocytic leukemia |
Initial sample | 505 European ancestry cases, 1,438 European ancestry controls |
Replication sample | 1,024 European ancestry cases, 1,677 European ancestry controls |
Region | 15q23 |
Chromosome id | chr15 |
Chromosome position | 69726651 |
Reported gene | intergenic |
Mapped gene | PCAT29 - LINC00593 |
Upstream gene id | 104472713 |
Downstream gene id | 414926 |
SNP gene ids | |
Upstream gene distance | 30901 |
Downstream gene distance | 108583 |
SNP risk allele | rs7176508-A |
SNPs | rs7176508 |
Merged | 0 |
SNP id current | 7176508 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.37 |
P value | 0.000000000005 |
Pvalue mlog | 11.3010299956639 |
P value text | |
Or beta | 1.37 |
%95 Ci | [1.26-1.50] |
Platform | Illumina [345665] |
CNV | N |
Mapped trait | chronic lymphocytic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000095 |
Study accession | GCST000224 |
PubMed ID | 22700719 |
Journal | Blood |
Link | www.ncbi.nlm.nih.gov/pubmed/22700719 |
Study | Common variation at 6p21.31 (BAK1) influences the risk of chronic lymphocytic leukemia. |
Disease/Trait | Chronic lymphocytic leukemia |
Initial sample | 1,121 European ancestry cases, 3,745 European ancestry controls |
Replication sample | 861 European ancestry cases, 2,033 European ancestry controls |
Region | 15q23 |
Chromosome id | chr15 |
Chromosome position | 69726651 |
Reported gene | NR |
Mapped gene | PCAT29 - LINC00593 |
Upstream gene id | 104472713 |
Downstream gene id | 414926 |
SNP gene ids | |
Upstream gene distance | 30901 |
Downstream gene distance | 108583 |
SNP risk allele | rs7176508-A |
SNPs | rs7176508 |
Merged | 0 |
SNP id current | 7176508 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.37 |
P value | 0.00000000003 |
Pvalue mlog | 10.5228787452803 |
P value text | |
Or beta | 1.42 |
%95 Ci | [1.28-1.58] |
Platform | Affymetrix, Illumina [~ 1500000] (imputed) |
CNV | N |
Mapped trait | chronic lymphocytic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000095 |
Study accession | GCST001570 |
PubMed ID | 23770605 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23770605 |
Study | Genome-wide association study identifies multiple risk loci for chronic lymphocytic leukemia. |
Disease/Trait | Chronic lymphocytic leukemia |
Initial sample | 2,179 European ancestry cases, 6,221 European ancestry controls |
Replication sample | 1,709 European ancestry cases, 6,318 European ancestry controls |
Region | 15q23 |
Chromosome id | chr15 |
Chromosome position | 69726651 |
Reported gene | RPLP1 |
Mapped gene | PCAT29 - LINC00593 |
Upstream gene id | 104472713 |
Downstream gene id | 414926 |
SNP gene ids | |
Upstream gene distance | 30901 |
Downstream gene distance | 108583 |
SNP risk allele | rs7176508-A |
SNPs | rs7176508 |
Merged | 0 |
SNP id current | 7176508 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.39 |
P value | 0.00000000000000001 |
Pvalue mlog | 17 |
P value text | |
Or beta | 1.32 |
%95 Ci | [NR] |
Platform | Illumina [549934] |
CNV | N |
Mapped trait | chronic lymphocytic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000095 |
Study accession | GCST002073 |
PubMed ID | 24292274 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24292274 |
Study | A genome-wide association study identifies multiple susceptibility loci for chronic lymphocytic leukemia. |
Disease/Trait | Chronic lymphocytic leukemia |
Initial sample | 1,739 European ancestry cases, 5,199 European ancestry controls |
Replication sample | 1,144 European ancestry cases, 3,151 European ancestry controls |
Region | 15q23 |
Chromosome id | chr15 |
Chromosome position | 69726651 |
Reported gene | RPLP1 |
Mapped gene | PCAT29 - LINC00593 |
Upstream gene id | 104472713 |
Downstream gene id | 414926 |
SNP gene ids | |
Upstream gene distance | 30901 |
Downstream gene distance | 108583 |
SNP risk allele | rs7176508-A |
SNPs | rs7176508 |
Merged | 0 |
SNP id current | 7176508 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.38 |
P value | 0.000000000000000008 |
Pvalue mlog | 17.096910013008 |
P value text | |
Or beta | 1.42 |
%95 Ci | [NR] |
Platform | Illumina [450000] (imputed) |
CNV | N |
Mapped trait | chronic lymphocytic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000095 |
Study accession | GCST002299 |