Human SNP ID | rs7172432 |
---|---|
Human chromosome | chr15 |
Human SNP position | 62104190 |
Pig chromosome | chr1 |
Pig SNP position | 121315323 |
PubMed ID | 20818381 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20818381 |
Study | A genome-wide association study in the Japanese population identifies susceptibility loci for type 2 diabetes at UBE2E2 and C2CD4A-C2CD4B. |
Disease/Trait | Type 2 diabetes |
Initial sample | 4,470 Japanese ancestry cases, 3,071 Japanese ancestry controls |
Replication sample | 10,692 Japanese ancestry cases, 9,597 Japanese ancestry controls, 6,980 European ancestry cases, 8,615 European ancestry controls |
Region | 15q22.2 |
Chromosome id | chr15 |
Chromosome position | 62104190 |
Reported gene | C2CD4B, C2CD4A |
Mapped gene | NPM1P47 - C2CD4B |
Upstream gene id | 100129972 |
Downstream gene id | 388125 |
SNP gene ids | |
Upstream gene distance | 20791 |
Downstream gene distance | 59348 |
SNP risk allele | rs7172432-? |
SNPs | rs7172432 |
Merged | 0 |
SNP id current | 7172432 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.58 |
P value | 0.00000000000009 |
Pvalue mlog | 13.0457574905606 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.08-1.14] |
Platform | Illumina [459359] |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST000787 |
PubMed ID | 23945395 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23945395 |
Study | Genome-wide association study identifies three novel loci for type 2 diabetes. |
Disease/Trait | Type 2 diabetes |
Initial sample | 5,976 Japanese ancestry cases, 20,829 Japanese ancestry controls |
Replication sample | 24,416 East Asian ancestry cases, 13,985 East Asian ancestry controls |
Region | 15q22.2 |
Chromosome id | chr15 |
Chromosome position | 62104190 |
Reported gene | C2CD4B, C2CD4A |
Mapped gene | NPM1P47 - C2CD4B |
Upstream gene id | 100129972 |
Downstream gene id | 388125 |
SNP gene ids | |
Upstream gene distance | 20791 |
Downstream gene distance | 59348 |
SNP risk allele | rs7172432-A |
SNPs | rs7172432 |
Merged | 0 |
SNP id current | 7172432 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.57 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.11 |
%95 Ci | [1.07-1.16] |
Platform | Illumina [6209637] (imputed) |
CNV | N |
Mapped trait | type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST002128 |