Human SNP ID | rs71647933 |
---|---|
Human chromosome | chr1 |
Human SNP position | 33480000 |
Pig chromosome | chr6 |
Pig SNP position | 83841064 |
PubMed ID | 26629533 |
---|---|
Journal | EBioMedicine |
Link | www.ncbi.nlm.nih.gov/pubmed/26629533 |
Study | A Genome-wide Association Study Provides Evidence of Sex-specific Involvement of Chr1p35.1 (ZSCAN20-TLR12P) and Chr8p23.1 (HMGB1P46) With Diabetic Neuropathic Pain. |
Disease/Trait | Neuropathic pain in type 2 diabetes |
Initial sample | 470 European ancestry male cases, 491 European ancestry female cases, 2,021 European ancestry male controls, 1,239 European ancestry female controls |
Replication sample | NA |
Region | 1p35.1 |
Chromosome id | chr1 |
Chromosome position | 33480000 |
Reported gene | ZSCAN20, TLR12P |
Mapped gene | ZSCAN20 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7579 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs71647933-G |
SNPs | rs71647933 |
Merged | |
SNP id current | 71647933 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.16 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | (females) |
Or beta | 2.31 |
%95 Ci | [1.68-3.17] |
Platform | Affymetrix, Illumina [6906962] (imputed) |
CNV | N |
Mapped trait | neuropathic pain, type II diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005762, http://www.ebi.ac.uk/efo/EFO_0001360 |
Study accession | GCST003063 |