SNP Detail For rs71647933
1.Mapping Information
Human SNP ID rs71647933
Human chromosome chr1
Human SNP position 33480000
Pig chromosome chr6
Pig SNP position 83841064
2.Annotation Information
PubMed ID26629533
JournalEBioMedicine
Linkwww.ncbi.nlm.nih.gov/pubmed/26629533
StudyA Genome-wide Association Study Provides Evidence of Sex-specific Involvement of Chr1p35.1 (ZSCAN20-TLR12P) and Chr8p23.1 (HMGB1P46) With Diabetic Neuropathic Pain.
Disease/TraitNeuropathic pain in type 2 diabetes
Initial sample470 European ancestry male cases, 491 European ancestry female cases, 2,021 European ancestry male controls, 1,239 European ancestry female controls
Replication sampleNA
Region1p35.1
Chromosome idchr1
Chromosome position33480000
Reported geneZSCAN20, TLR12P
Mapped geneZSCAN20
Upstream gene id
Downstream gene id
SNP gene ids7579
Upstream gene distance
Downstream gene distance
SNP risk allelers71647933-G
SNPsrs71647933
Merged
SNP id current71647933
Contextintron_variant
Intergenic0
Allele frequency0.16
P value0.0000003
Pvalue mlog6.52287874528033
P value text(females)
Or beta2.31
%95 Ci[1.68-3.17]
PlatformAffymetrix, Illumina [6906962] (imputed)
CNVN
Mapped traitneuropathic pain, type II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005762, http://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST003063