SNP Detail For rs7163757
1.Mapping Information
Human SNP ID rs7163757
Human chromosome chr15
Human SNP position 62099409
Pig chromosome chr1
Pig SNP position 121317916
2.Annotation Information
PubMed ID24509480
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24509480
StudyGenome-wide trans-ancestry meta-analysis provides insight into the genetic architecture of type 2 diabetes susceptibility.
Disease/TraitType 2 diabetes
Initial sample12,171 European ancestry cases, 56,862 European ancestry controls, 6,952 East Asian ancestry cases, 11,865 East Asian ancestry controls, 5,561 South Asian ancestry cases, 14,458 South Asian ancestry controls, 1,804 Mexican ancestry cases, 779 Mexican ance
Replication sample21,491 European ancestry cases, 55,647 European ancestry controls
Region15q22.2
Chromosome idchr15
Chromosome position62099409
Reported geneC2CD4A
Mapped geneNPM1P47 - C2CD4B
Upstream gene id100129972
Downstream gene id388125
SNP gene ids
Upstream gene distance16010
Downstream gene distance64129
SNP risk allelers7163757-C
SNPsrs7163757
Merged0
SNP id current7163757
Contextregulatory_region_variant
Intergenic1
Allele frequency0.56
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.06
%95 Ci[1.02-1.11]
PlatformAffymetrix, Illumina [2500000] (imputed)
CNVN
Mapped traittype II diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360
Study accessionGCST002352