SNP Detail For rs715921
1.Mapping Information
Human SNP ID rs715921
Human chromosome chr13
Human SNP position 24221351
Pig chromosome chr11
Pig SNP position 2290989
2.Annotation Information
PubMed ID22837378
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/22837378
StudyGenome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.
Disease/TraitAirflow obstruction
Initial sampleup to 3,368 European ancestry cases, up to 29,507 European ancestry controls
Replication sample331 European ancestry cases, 2,550 European ancestry controls
Region13q12.12
Chromosome idchr13
Chromosome position24221351
Reported geneSPATA13
Mapped geneSPATA13
Upstream gene id
Downstream gene id
SNP gene ids221178
Upstream gene distance
Downstream gene distance
SNP risk allelers715921-A
SNPsrs715921
Merged0
SNP id current715921
Contextintron_variant
Intergenic0
Allele frequency0.31
P value0.0000008
Pvalue mlog6.09691001300805
P value text(No asthma)
Or beta1.2
%95 Ci[NR]
PlatformAffymetrix, Illumina [up to 2500000] (imputed)
CNVN
Mapped traitpulmonary function measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003892
Study accessionGCST001621