SNP Detail For rs7155603
1.Mapping Information
Human SNP ID rs7155603
Human chromosome chr14
Human SNP position 75494193
Pig chromosome chr7
Pig SNP position 104550835
2.Annotation Information
PubMed ID20453842
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20453842
StudyGenome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci.
Disease/TraitRheumatoid arthritis
Initial sample5,539 European ancestry cases, 20,169 European ancestry controls
Replication sample6,768 European ancestry cases, 8,806 European ancestry controls
Region14q24.3
Chromosome idchr14
Chromosome position75494193
Reported geneBATF
Mapped geneJDP2 - LOC105370572
Upstream gene id122953
Downstream gene id105370572
SNP gene ids
Upstream gene distance21492
Downstream gene distance21146
SNP risk allelers7155603-G
SNPsrs7155603
Merged0
SNP id current7155603
Contextintergenic_variant
Intergenic1
Allele frequency0.19
P value0.0000001
Pvalue mlog7
P value text
Or beta1.16
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 2716259] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST000679