Human SNP ID | rs7155603 |
---|---|
Human chromosome | chr14 |
Human SNP position | 75494193 |
Pig chromosome | chr7 |
Pig SNP position | 104550835 |
PubMed ID | 20453842 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20453842 |
Study | Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 5,539 European ancestry cases, 20,169 European ancestry controls |
Replication sample | 6,768 European ancestry cases, 8,806 European ancestry controls |
Region | 14q24.3 |
Chromosome id | chr14 |
Chromosome position | 75494193 |
Reported gene | BATF |
Mapped gene | JDP2 - LOC105370572 |
Upstream gene id | 122953 |
Downstream gene id | 105370572 |
SNP gene ids | |
Upstream gene distance | 21492 |
Downstream gene distance | 21146 |
SNP risk allele | rs7155603-G |
SNPs | rs7155603 |
Merged | 0 |
SNP id current | 7155603 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.19 |
P value | 0.0000001 |
Pvalue mlog | 7 |
P value text | |
Or beta | 1.16 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 2716259] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST000679 |